Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17351

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 730

Length: 1218
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.28


Found at i:100 original size:3 final size:3

Alignment explanation


    Indices: 92--121  Score: 51
    Period size: 3  Copynumber: 10.0  Consensus size: 3

         82 CCTGACGGCA

                        *                          
         92 ATG ATG ATG GTG ATG ATG ATG ATG ATG ATG
          1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG

        122 TTGCTGCTGC


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.30, C:0.00, G:0.37, T:0.33


Consensus pattern (3 bp):   
ATG

Done.