Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_09880

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 316

Length: 527
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.23


Found at i:347 original size:23 final size:23

Alignment explanation


    Indices: 317--363  Score: 94
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        307 GGGATGACAA

                                   
        317 GACCGGCCGCTCTGACACGCGGG
          1 GACCGGCCGCTCTGACACGCGGG

                                   
        340 GACCGGCCGCTCTGACACGCGGG
          1 GACCGGCCGCTCTGACACGCGGG

             
        363 G
          1 G

        364 GTGGGGACAG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.13, C:0.38, G:0.40, T:0.09


Consensus pattern (23 bp):   
GACCGGCCGCTCTGACACGCGGG
Done.