Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_15264

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5730
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.30


Found at i:3327 original size:24 final size:24

Alignment explanation


    Indices: 3297--3350  Score: 65
    Period size: 24  Copynumber: 2.2  Consensus size: 24

       3287 CTGTGGAGAT

                   *      *          
       3297 TGATGATGCTT-TGGTGATTGAAGA
          1 TGATGATACTTCTGATGA-TGAAGA

                    *               
       3321 TGATGATATTTCTGATGATGAAGA
          1 TGATGATACTTCTGATGATGAAGA

                  
       3345 TGATGA
          1 TGATGA

       3351 ACATGAAGAT


Statistics
Matches: 26,  Mismatches: 3, Indels: 2
        0.84            0.10        0.06

Matches are distributed among these distances:
  24   21  0.81
  25    5  0.19

ACGTcount: A:0.30, C:0.04, G:0.30, T:0.37


Consensus pattern (24 bp):   
TGATGATACTTCTGATGATGAAGA
Done.