Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_34872

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 673

Length: 1122
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28


Found at i:1116 original size:12 final size:12

Alignment explanation


    Indices: 1080--1116  Score: 56
    Period size: 12  Copynumber: 3.1  Consensus size: 12

       1070 CAGATAAAGG

                        
       1080 TAGTGGAATCCA
          1 TAGTGGAATCCA

            *       *   
       1092 CAGTGGAACCCA
          1 TAGTGGAATCCA

                        
       1104 TAGTGGAATCCA
          1 TAGTGGAATCCA

             
       1116 T
          1 T

       1117 GGCTAA


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  12   21  1.00

ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22


Consensus pattern (12 bp):   
TAGTGGAATCCA
Done.