Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_30135

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 670

Length: 1118
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28


Found at i:60 original size:12 final size:12

Alignment explanation


    Indices: 43--78  Score: 54
    Period size: 12  Copynumber: 3.0  Consensus size: 12

         33 CCCTCATGTG

                     *  
         43 CCTGACCCTGAC
          1 CCTGACCCTCAC

                        
         55 CCTGACCCTCAC
          1 CCTGACCCTCAC

               *        
         67 CCTCACCCTCAC
          1 CCTGACCCTCAC

         79 TCCATCCTCA


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  12   22  1.00

ACGTcount: A:0.17, C:0.58, G:0.08, T:0.17


Consensus pattern (12 bp):   
CCTGACCCTCAC
Done.