Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07746

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 417

Length: 696
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28


Found at i:636 original size:25 final size:25

Alignment explanation


    Indices: 619--668  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        609 TTTTACGGTC

                                     
        619 TTTGTCACTGTCTTTTTTGTAACAT
          1 TTTGTCACTGTCTTTTTTGTAACAT

                                     
        644 TTTGTCACTGTCTTTTTTGTAACAT
          1 TTTGTCACTGTCTTTTTTGTAACAT

        669 CCCCTACCCG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.16, C:0.16, G:0.12, T:0.56


Consensus pattern (25 bp):   
TTTGTCACTGTCTTTTTTGTAACAT
Done.