Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_31991

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2217
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25


Found at i:2182 original size:15 final size:15

Alignment explanation


    Indices: 2159--2197  Score: 60
    Period size: 15  Copynumber: 2.6  Consensus size: 15

       2149 TCCTCAGAAG

                           
       2159 AAGTTATCGACGAGA
          1 AAGTTATCGACGAGA

              *          * 
       2174 AATTTATCGACGATA
          1 AAGTTATCGACGAGA

                     
       2189 AAGTTATCG
          1 AAGTTATCG

       2198 CTGAAAATGG


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  15   21  1.00

ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28


Consensus pattern (15 bp):   
AAGTTATCGACGAGA
Done.