Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_02011

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 707

Length: 1179
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29


Found at i:239 original size:18 final size:18

Alignment explanation


    Indices: 216--250  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        206 CGTCGGCTAA

                  *           
        216 TTCCTCTGCTTCTTCTTT
          1 TTCCTCCGCTTCTTCTTT

                    *        
        234 TTCCTCCGTTTCTTCTT
          1 TTCCTCCGCTTCTTCTT

        251 CCTCCAACGC


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.00, C:0.34, G:0.06, T:0.60


Consensus pattern (18 bp):   
TTCCTCCGCTTCTTCTTT
Done.