Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_23012

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9052
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.29


Found at i:4360 original size:15 final size:15

Alignment explanation


    Indices: 4342--4390  Score: 80
    Period size: 15  Copynumber: 3.3  Consensus size: 15

       4332 ATTCCATTGC

                           
       4342 ATCAACTGGTAGAGA
          1 ATCAACTGGTAGAGA

                    *      
       4357 ATCAACTGTTAGAGA
          1 ATCAACTGGTAGAGA

                 *         
       4372 ATCAATTGGTAGAGA
          1 ATCAACTGGTAGAGA

                
       4387 ATCA
          1 ATCA

       4391 TCAGAAGGTT


Statistics
Matches: 31,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  15   31  1.00

ACGTcount: A:0.41, C:0.12, G:0.22, T:0.24


Consensus pattern (15 bp):   
ATCAACTGGTAGAGA
Done.