Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_37983

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1668
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.26


Found at i:1193 original size:132 final size:132

Alignment explanation


    Indices: 950--1614  Score: 1179
    Period size: 132  Copynumber: 5.0  Consensus size: 132

        940 GGTTATCAGC

                                                                             
        950 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT
          1 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT

                               *                *            *               
       1015 TCACCACATCAGGAAACTTTGGCTGCAGCTGCTGCCTACACGGACTGGCTTGTTGATGAAGATCT
         66 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT

              
       1080 TA
        131 TA

                                   *                                         
       1082 TACAAACTTCATTTAGCCCTGCAACTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT
          1 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT

                                *                    *       *               
       1147 TCACCACATCAGGAAACTTCAGCTGCAGCTGCTGCCGACACAGACTGGCTTGTTGATGAAGATCT
         66 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT

              
       1212 TA
        131 TA

                                                                             
       1214 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT
          1 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT

                                                *   *    *                   
       1279 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCAACATGGACAGGCCTGTTGAT-AAGGATC
         66 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAA-GATC

               
       1343 TTA
        130 TTA

                                                                             
       1346 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT
          1 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT

                                *                                            
       1411 TCACCACATCAGGAAACTTCAGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT
         66 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT

              
       1476 TA
        131 TA

                                                          *                  
       1478 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCTAATGGCTATTCTGGAAGT
          1 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT

            *                                       **                       
       1543 GCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACATTGACTGGCCTGTTGATGAAGATCT
         66 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT

              
       1608 TA
        131 TA

                 
       1610 TACAA
          1 TACAA

       1615 GCTTTCTTTA


Statistics
Matches: 510,  Mismatches: 21, Indels: 4
        0.95            0.04        0.01

Matches are distributed among these distances:
 131    2  0.00
 132  506  0.99
 133    2  0.00

ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27


Consensus pattern (132 bp):   
TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT
TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT
TA

Done.