Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_37631

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 302

Length: 504
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29


Found at i:139 original size:6 final size:6

Alignment explanation


    Indices: 130--167  Score: 58
    Period size: 6  Copynumber: 6.3  Consensus size: 6

        120 TATCCATCTC

                                      *      *          
        130 TCCTCG TCCTCG TCCTCG TCCTCC TCCTCC TCCTCG TC
          1 TCCTCG TCCTCG TCCTCG TCCTCG TCCTCG TCCTCG TC

        168 ATCATCATCA


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   6   30  1.00

ACGTcount: A:0.00, C:0.55, G:0.11, T:0.34


Consensus pattern (6 bp):   
TCCTCG

Done.