Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_02851

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 913

Length: 1523
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25


Found at i:1162 original size:15 final size:15

Alignment explanation


    Indices: 1144--1172  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

       1134 TGTTGGCTTT

                           
       1144 ACAAATGCAACACCG
          1 ACAAATGCAACACCG

                          
       1159 ACAAATGCAACACC
          1 ACAAATGCAACACC

       1173 AGGAGGAGGG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.48, C:0.34, G:0.10, T:0.07


Consensus pattern (15 bp):   
ACAAATGCAACACCG
Done.