Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_29666

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 574

Length: 957
ACGTcount: A:0.34, C:0.19, G:0.29, T:0.18


Found at i:877 original size:33 final size:33

Alignment explanation


    Indices: 800--878  Score: 122
    Period size: 33  Copynumber: 2.4  Consensus size: 33

        790 TACATCAACA

                                  *          
        800 TGAATCAAGGGTATATGTCTCATCCTGGGTATG
          1 TGAATCAAGGGTATATGTCTCACCCTGGGTATG

            *  *                             
        833 CGAGTCAAGGGTATATGTCTCACCCTGGGTATG
          1 TGAATCAAGGGTATATGTCTCACCCTGGGTATG

                  *      
        866 TGAATCCAGGGTA
          1 TGAATCAAGGGTA

        879 CATGGTGGAC


Statistics
Matches: 40,  Mismatches: 6, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  33   40  1.00

ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29


Consensus pattern (33 bp):   
TGAATCAAGGGTATATGTCTCACCCTGGGTATG
Done.