Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_19908

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 471

Length: 786
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28


Found at i:671 original size:27 final size:27

Alignment explanation


    Indices: 633--692  Score: 111
    Period size: 27  Copynumber: 2.2  Consensus size: 27

        623 TCAAAGGCGT

                                       
        633 GATGATAACTCACCCAAACCTAATCGC
          1 GATGATAACTCACCCAAACCTAATCGC

                                       
        660 GATGATAACTCACCCAAACCTAATCGC
          1 GATGATAACTCACCCAAACCTAATCGC

            *     
        687 AATGAT
          1 GATGAT

        693 GACGGTGATT


Statistics
Matches: 32,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  27   32  1.00

ACGTcount: A:0.38, C:0.30, G:0.12, T:0.20


Consensus pattern (27 bp):   
GATGATAACTCACCCAAACCTAATCGC
Done.