Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_31967

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3317
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:3161 original size:69 final size:69

Alignment explanation


    Indices: 3061--3197  Score: 193
    Period size: 69  Copynumber: 2.0  Consensus size: 69

       3051 TCTCTTTGCA

                   *    *      *                                *            
       3061 ATTTGTCTATCTCCAACTGTCCCAACCTCCAATCCATGCCCCCAAACATGCTTCCACACTCTCTT
          1 ATTTGTCAATCTACAACTGCCCCAACCTCCAATCCATGCCCCCAAACATGCTCCCACACTCTCTT

                
       3126 TCTT
         66 TCTT

                            *        *              *              * *       
       3130 ATTTGTCAATCTACAATTGCCCCAAGCTCCAATCCATGCCGCCAAACATGCTCCCTCCCTCTCTT
          1 ATTTGTCAATCTACAACTGCCCCAACCTCCAATCCATGCCCCCAAACATGCTCCCACACTCTCTT

               
       3195 TCT
         66 TCT

       3198 CGTTTATCCA


Statistics
Matches: 59,  Mismatches: 9, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  69   59  1.00

ACGTcount: A:0.22, C:0.40, G:0.07, T:0.31


Consensus pattern (69 bp):   
ATTTGTCAATCTACAACTGCCCCAACCTCCAATCCATGCCCCCAAACATGCTCCCACACTCTCTT
TCTT
Done.