Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_32788

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 271

Length: 452
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31


Found at i:79 original size:6 final size:6

Alignment explanation


    Indices: 68--93  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

         58 CCCCGTCGCA

                                          
         68 TTCCCC TTCCCC TTCCCC TTCCCC TT
          1 TTCCCC TTCCCC TTCCCC TTCCCC TT

         94 GGGTTGCAAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38


Consensus pattern (6 bp):   
TTCCCC

Done.