Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_38643

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 509

Length: 849
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23


Found at i:347 original size:6 final size:6

Alignment explanation


    Indices: 338--368  Score: 62
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        328 AACTCCAACT

                                                
        338 GCAGTA GCAGTA GCAGTA GCAGTA GCAGTA G
          1 GCAGTA GCAGTA GCAGTA GCAGTA GCAGTA G

        369 GGGATCAACA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.32, C:0.16, G:0.35, T:0.16


Consensus pattern (6 bp):   
GCAGTA

Done.