Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_15712

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 333

Length: 555
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28


Found at i:36 original size:9 final size:9

Alignment explanation


    Indices: 22--52  Score: 53
    Period size: 9  Copynumber: 3.4  Consensus size: 9

         12 AATCTCCGGT

                     
         22 ATCACTGAA
          1 ATCACTGAA

                     
         31 ATCACTGAA
          1 ATCACTGAA

               *     
         40 ATCTCTGAA
          1 ATCACTGAA

                
         49 ATCA
          1 ATCA

         53 TGCAAGAGAG


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   9   20  1.00

ACGTcount: A:0.42, C:0.23, G:0.10, T:0.26


Consensus pattern (9 bp):   
ATCACTGAA
Done.