Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06951

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 543

Length: 905
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27


Found at i:662 original size:18 final size:18

Alignment explanation


    Indices: 639--674  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        629 ACCTGGAGTT

                              
        639 CAACTGAATAAAAGAGAC
          1 CAACTGAATAAAAGAGAC

                              
        657 CAACTGAATAAAAGAGAC
          1 CAACTGAATAAAAGAGAC

        675 TGTTCTCATT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.56, C:0.17, G:0.17, T:0.11


Consensus pattern (18 bp):   
CAACTGAATAAAAGAGAC
Done.