Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10576

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 720

Length: 1200
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:310 original size:2 final size:2

Alignment explanation


    Indices: 303--332  Score: 51
    Period size: 2  Copynumber: 15.0  Consensus size: 2

        293 GAAGTGTACA

                                                 *      
        303 AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        333 GAATAATTAT


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   26  1.00

ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47


Consensus pattern (2 bp):   
AT

Done.