Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_21406

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 505

Length: 843
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28


Found at i:71 original size:21 final size:21

Alignment explanation


    Indices: 32--72  Score: 57
    Period size: 23  Copynumber: 1.9  Consensus size: 21

         22 CTCACTTCAC

                                  
         32 TTTCCTTCTTCTCTTCTTCCCT
          1 TTTCCTTCTTCTC-TCTTCCCT

                                
         54 TTTCCTCTCTTCTC-CTTCC
          1 TTTCCT-TCTTCTCTCTTCC

         73 TCTAAACTCT


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  21    5  0.28
  22    6  0.33
  23    7  0.39

ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56


Consensus pattern (21 bp):   
TTTCCTTCTTCTCTCTTCCCT
Done.