Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_24256

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 538

Length: 897
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.30


Found at i:779 original size:3 final size:3

Alignment explanation


    Indices: 771--803  Score: 66
    Period size: 3  Copynumber: 11.0  Consensus size: 3

        761 TCAAGCCTAT

                                                       
        771 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC

        804 CTCTGAAACA


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   30  1.00

ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67


Consensus pattern (3 bp):   
TTC

Done.