Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_11532

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1736
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27


Found at i:160 original size:18 final size:18

Alignment explanation


    Indices: 121--161  Score: 64
    Period size: 18  Copynumber: 2.3  Consensus size: 18

        111 GCCTGATGGT

                          *  *
        121 TCTTCTCCATCATCTTCC
          1 TCTTCTCCATCATCATCA

                              
        139 TCTTCTCCATCATCATCA
          1 TCTTCTCCATCATCATCA

                 
        157 TCTTC
          1 TCTTC

        162 CAAAGCTTTG


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.15, C:0.41, G:0.00, T:0.44


Consensus pattern (18 bp):   
TCTTCTCCATCATCATCA
Done.