Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_40049

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2109
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30


Found at i:191 original size:17 final size:17

Alignment explanation


    Indices: 160--192  Score: 50
    Period size: 17  Copynumber: 1.9  Consensus size: 17

        150 TAACGCAAGG

                             
        160 GACCTTTTCATGATCCC
          1 GACCTTTTCATGATCCC

                             
        177 GACCTGTTTCA-GATCC
          1 GACCT-TTTCATGATCC

        193 GTCACTGACT


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  17   10  0.67
  18    5  0.33

ACGTcount: A:0.18, C:0.33, G:0.15, T:0.33


Consensus pattern (17 bp):   
GACCTTTTCATGATCCC
Done.