Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_36320

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 986

Length: 1644
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28


Found at i:114 original size:21 final size:21

Alignment explanation


    Indices: 90--129  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

         80 AATATCTCCA

                     *           
         90 TGTTTTGGAGTTTGTTGTTGC
          1 TGTTTTGGACTTTGTTGTTGC

                    *          
        111 TGTTTTGGTCTTTGTTGTT
          1 TGTTTTGGACTTTGTTGTT

        130 ATCAATTCGT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.03, C:0.05, G:0.30, T:0.62


Consensus pattern (21 bp):   
TGTTTTGGACTTTGTTGTTGC
Done.