Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04167

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 651

Length: 1086
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.26


Found at i:864 original size:6 final size:6

Alignment explanation


    Indices: 853--893  Score: 55
    Period size: 6  Copynumber: 6.8  Consensus size: 6

        843 ATCCGAAGAG

                                      *      *      *      
        853 GAGGAA GAGGAA GAGGAA GAGGAC GAGGAT GAGGAT GAGGA
          1 GAGGAA GAGGAA GAGGAA GAGGAA GAGGAA GAGGAA GAGGA

        894 GACTAAAGCG


Statistics
Matches: 33,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   6   33  1.00

ACGTcount: A:0.41, C:0.02, G:0.51, T:0.05


Consensus pattern (6 bp):   
GAGGAA

Done.