Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_00722

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 309

Length: 516
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27


Found at i:377 original size:12 final size:12

Alignment explanation


    Indices: 360--393  Score: 50
    Period size: 12  Copynumber: 2.8  Consensus size: 12

        350 ATAACAATAT

                        
        360 TGGTGGTGGTGA
          1 TGGTGGTGGTGA

                  *     
        372 TGGTGGCGGTGA
          1 TGGTGGTGGTGA

             *        
        384 TTGTGGTGGT
          1 TGGTGGTGGT

        394 TTTAATGTTG


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.06, C:0.03, G:0.56, T:0.35


Consensus pattern (12 bp):   
TGGTGGTGGTGA
Done.