Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_36158

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 417

Length: 696
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25


Found at i:586 original size:27 final size:27

Alignment explanation


    Indices: 545--596  Score: 68
    Period size: 27  Copynumber: 1.9  Consensus size: 27

        535 GACGATCAGC

                *     *                
        545 ATCAGCATCAGCACCACCACCACCACT
          1 ATCACCATCAACACCACCACCACCACT

                           *  *      
        572 ATCACCATCAACACCGCCGCCACCA
          1 ATCACCATCAACACCACCACCACCA

        597 TCACCACCGC


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  27   21  1.00

ACGTcount: A:0.33, C:0.50, G:0.08, T:0.10


Consensus pattern (27 bp):   
ATCACCATCAACACCACCACCACCACT

Found at i:595 original size:18 final size:18

Alignment explanation


    Indices: 574--611  Score: 67
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        564 CCACCACTAT

                              
        574 CACCATCAACACCGCCGC
          1 CACCATCAACACCGCCGC

                    *         
        592 CACCATCACCACCGCCGC
          1 CACCATCAACACCGCCGC

              
        610 CA
          1 CA

        612 TAACGGAGAG


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.26, C:0.58, G:0.11, T:0.05


Consensus pattern (18 bp):   
CACCATCAACACCGCCGC
Done.