Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_34041

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2241
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30


Found at i:638 original size:21 final size:21

Alignment explanation


    Indices: 612--657  Score: 65
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        602 GAAGTCTAGC

                  *       *      
        612 TAAAAAGCTGAATTTGGTTGA
          1 TAAAAAACTGAATTCGGTTGA

                            *    
        633 TAAAAAACTGAATTCGTTTGA
          1 TAAAAAACTGAATTCGGTTGA

                
        654 TAAA
          1 TAAA

        658 GTTGTGATGA


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.43, C:0.07, G:0.17, T:0.33


Consensus pattern (21 bp):   
TAAAAAACTGAATTCGGTTGA
Done.