Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18916

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 635

Length: 1059
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.25


Found at i:966 original size:17 final size:17

Alignment explanation


    Indices: 941--974  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        931 CAGATGGAGT

                *            
        941 ACATTGATACCATCATC
          1 ACATCGATACCATCATC

                       *     
        958 ACATCGATACCCTCATC
          1 ACATCGATACCATCATC

        975 TTCATCATCA


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.32, C:0.35, G:0.06, T:0.26


Consensus pattern (17 bp):   
ACATCGATACCATCATC
Done.