Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18444

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 520

Length: 867
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25


Found at i:830 original size:1 final size:1

Alignment explanation


    Indices: 824--850  Score: 54
    Period size: 1  Copynumber: 27.0  Consensus size: 1

        814 GAAAGAATTT

                                       
        824 AAAAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAAA

        851 CACAACACCA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   26  1.00

ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00


Consensus pattern (1 bp):   
A

Done.