Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_33425

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 601

Length: 1002
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.26


Found at i:855 original size:36 final size:36

Alignment explanation


    Indices: 815--885  Score: 106
    Period size: 36  Copynumber: 2.0  Consensus size: 36

        805 CCCAAGGCTG

                                 *              
        815 AGCACCACCCAAAAATCCTACCAGAGGAAAAATATA
          1 AGCACCACCCAAAAATCCTACAAGAGGAAAAATATA

                       *  *     *              
        851 AGCACCACCCAGAATTCCTAGAAGAGGAAAAATAT
          1 AGCACCACCCAAAAATCCTACAAGAGGAAAAATAT

        886 GCAAGGAACC


Statistics
Matches: 31,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  36   31  1.00

ACGTcount: A:0.48, C:0.25, G:0.14, T:0.13


Consensus pattern (36 bp):   
AGCACCACCCAAAAATCCTACAAGAGGAAAAATATA
Done.