Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17921

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2840
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27


Found at i:1296 original size:30 final size:30

Alignment explanation


    Indices: 1262--1357  Score: 138
    Period size: 30  Copynumber: 3.2  Consensus size: 30

       1252 CCTCCACCTC

                                     *    
       1262 CTGGTGCTCCTCCACCACCTCCTCCGAAAG
          1 CTGGTGCTCCTCCACCACCTCCTCCAAAAG

                   *     *         * *    
       1292 CTGGTGCCCCTCCGCCACCTCCTTCTAAAG
          1 CTGGTGCTCCTCCACCACCTCCTCCAAAAG

                *                         
       1322 CTGGCGCTCCTCCACCACCTCCTCCAAAAG
          1 CTGGTGCTCCTCCACCACCTCCTCCAAAAG

                  
       1352 CTGGTG
          1 CTGGTG

       1358 GTGGTCCTAG


Statistics
Matches: 56,  Mismatches: 10, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  30   56  1.00

ACGTcount: A:0.16, C:0.46, G:0.18, T:0.21


Consensus pattern (30 bp):   
CTGGTGCTCCTCCACCACCTCCTCCAAAAG
Done.