Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_12738

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 208
ACGTcount: A:0.15, C:0.08, G:0.49, T:0.28


Found at i:69 original size:48 final size:48

Alignment explanation


    Indices: 9--141  Score: 212
    Period size: 48  Copynumber: 2.8  Consensus size: 48

          1 ATGGTGGG

                                *                       *   
          9 GGTGGAGACTTGTACTTGTAGGGGTGCTTGGGTGGTGATGGTGGGGGT
          1 GGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGAGGT

                           *                                
         57 GGTGGAGACTTGTACGTGTAAGGGTGCTTGGGTGGTGATGGTGGAGGT
          1 GGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGAGGT

                       *           * *           
        105 GGTGGAGACTTATACTTGTAAGGCTCCTTGGGTGGTG
          1 GGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTG

        142 GTGGGAGTAG


Statistics
Matches: 78,  Mismatches: 7, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  48   78  1.00

ACGTcount: A:0.14, C:0.08, G:0.47, T:0.31


Consensus pattern (48 bp):   
GGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGAGGT

Done.