Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_01627

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 644

Length: 1074
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.23


Found at i:304 original size:3 final size:3

Alignment explanation


    Indices: 296--324  Score: 58
    Period size: 3  Copynumber: 9.7  Consensus size: 3

        286 CGCAATGAAT

                                                  
        296 CGC CGC CGC CGC CGC CGC CGC CGC CGC CG
          1 CGC CGC CGC CGC CGC CGC CGC CGC CGC CG

        325 ACGTTGGAGT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   26  1.00

ACGTcount: A:0.00, C:0.66, G:0.34, T:0.00


Consensus pattern (3 bp):   
CGC

Done.