Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10217

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 432

Length: 720
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26


Found at i:300 original size:13 final size:14

Alignment explanation


    Indices: 276--309  Score: 52
    Period size: 13  Copynumber: 2.5  Consensus size: 14

        266 AAACAGCATT

                 *        
        276 AGAAGGTTTATGGA
          1 AGAAGATTTATGGA

                          
        290 A-AAGATTTATGGA
          1 AGAAGATTTATGGA

                   
        303 AGAAGAT
          1 AGAAGAT

        310 ACTCCGCTGA


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  13   12  0.67
  14    6  0.33

ACGTcount: A:0.44, C:0.00, G:0.29, T:0.26


Consensus pattern (14 bp):   
AGAAGATTTATGGA
Done.