Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_28339

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 757

Length: 1263
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25


Found at i:73 original size:3 final size:3

Alignment explanation


    Indices: 65--97  Score: 66
    Period size: 3  Copynumber: 11.0  Consensus size: 3

         55 AAAAATTTCC

                                                       
         65 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
          1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT

         98 TTGCTTCACC


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   30  1.00

ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33


Consensus pattern (3 bp):   
CAT

Done.