Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_11356

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 392

Length: 654
ACGTcount: A:0.27, C:0.10, G:0.43, T:0.20


Found at i:439 original size:27 final size:27

Alignment explanation


    Indices: 408--461  Score: 92
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        398 ATGGGGTGGG

                                        
        408 AATGGTGG-AGGAGGAGGTGGAGGAGGC
          1 AATGGTGGTAGG-GGAGGTGGAGGAGGC

                                       
        435 AATGGTGGTAGGGGAGGTGGAGGAGGC
          1 AATGGTGGTAGGGGAGGTGGAGGAGGC

        462 GGGGGAGGGA


Statistics
Matches: 26,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
  27   23  0.88
  28    3  0.12

ACGTcount: A:0.24, C:0.04, G:0.59, T:0.13


Consensus pattern (27 bp):   
AATGGTGGTAGGGGAGGTGGAGGAGGC
Done.