Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_40237

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 273
ACGTcount: A:0.35, C:0.21, G:0.31, T:0.13


Found at i:176 original size:21 final size:21

Alignment explanation


    Indices: 151--209  Score: 84
    Period size: 21  Copynumber: 2.8  Consensus size: 21

        141 AACAGAGAGG

                                 
        151 GAGGCAGCGGCAGCAGCAAG-
          1 GAGGCAGCGGCAGCAGCAAGA

                              *   
        171 GCAGGCAGCGGCAGCAGCGAGA
          1 G-AGGCAGCGGCAGCAGCAAGA

                   *         
        193 GAGGCAGAGGCAGCAGC
          1 GAGGCAGCGGCAGCAGC

        210 GATGGCAATA


Statistics
Matches: 35,  Mismatches: 2, Indels: 3
        0.88            0.05        0.08

Matches are distributed among these distances:
  20    1  0.03
  21   33  0.94
  22    1  0.03

ACGTcount: A:0.29, C:0.25, G:0.46, T:0.00


Consensus pattern (21 bp):   
GAGGCAGCGGCAGCAGCAAGA

Done.