Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_20271

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 545

Length: 909
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24


Found at i:280 original size:6 final size:6

Alignment explanation


    Indices: 269--294  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

        259 GTTCCTGATT

                                          
        269 ATGGTC ATGGTC ATGGTC ATGGTC AT
          1 ATGGTC ATGGTC ATGGTC ATGGTC AT

        295 TCCGATGCTG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.19, C:0.15, G:0.31, T:0.35


Consensus pattern (6 bp):   
ATGGTC

Done.