Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_26180

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2436
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29


Found at i:2394 original size:33 final size:33

Alignment explanation


    Indices: 2352--2419  Score: 91
    Period size: 33  Copynumber: 2.1  Consensus size: 33

       2342 AGGCTATGGA

                                             
       2352 CGGAAACAAAGACATTGCAACGGATCAAGTATC
          1 CGGAAACAAAGACATTGCAACGGATCAAGTATC

                        *   * * *         *  
       2385 CGGAAACAAAGATATTTCTATGGATCAAGTCTC
          1 CGGAAACAAAGACATTGCAACGGATCAAGTATC

              
       2418 CG
          1 CG

       2420 AAAAAGAAAT


Statistics
Matches: 30,  Mismatches: 5, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  33   30  1.00

ACGTcount: A:0.38, C:0.21, G:0.21, T:0.21


Consensus pattern (33 bp):   
CGGAAACAAAGACATTGCAACGGATCAAGTATC
Done.