Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_39167

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3414
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29


Found at i:57 original size:3 final size:3

Alignment explanation


    Indices: 25--78  Score: 65
    Period size: 3  Copynumber: 17.7  Consensus size: 3

         15 CTCGAGGCAA

                                      *    *                             
         25 TCT TCT TCAT TCT T-T ATCT CCT TTT TCT TCT TCT TCT TCT TCT TCT
          1 TCT TCT TC-T TCT TCT -TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT

                      
         71 TCT TCT TC
          1 TCT TCT TC

         79 AGTGCTGCAA


Statistics
Matches: 44,  Mismatches: 4, Indels: 6
        0.81            0.07        0.11

Matches are distributed among these distances:
   2    1  0.02
   3   39  0.89
   4    4  0.09

ACGTcount: A:0.04, C:0.31, G:0.00, T:0.65


Consensus pattern (3 bp):   
TCT

Done.