Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07546

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 408

Length: 681
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.23


Found at i:421 original size:15 final size:15

Alignment explanation


    Indices: 401--431  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        391 ACTGATATTC

                           
        401 GTGCCGCCGCTGCTA
          1 GTGCCGCCGCTGCTA

                       *   
        416 GTGCCGCCGCTTCTA
          1 GTGCCGCCGCTGCTA

             
        431 G
          1 G

        432 ACTACTACCC


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.06, C:0.39, G:0.32, T:0.23


Consensus pattern (15 bp):   
GTGCCGCCGCTGCTA
Done.