Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_05768

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1878
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29


Found at i:89 original size:25 final size:24

Alignment explanation


    Indices: 42--89  Score: 60
    Period size: 24  Copynumber: 2.0  Consensus size: 24

         32 ACACTAACGT

                     *        *     
         42 TGTTTCCCGCGATATTCCCATTGA
          1 TGTTTCCCGAGATATTCCAATTGA

                   *                
         66 TGTTTCCGGAGATGATTCCAATTG
          1 TGTTTCCCGAGAT-ATTCCAATTG

         90 TGCTGATTCT


Statistics
Matches: 20,  Mismatches: 3, Indels: 1
        0.83            0.12        0.04

Matches are distributed among these distances:
  24   11  0.55
  25    9  0.45

ACGTcount: A:0.19, C:0.23, G:0.21, T:0.38


Consensus pattern (24 bp):   
TGTTTCCCGAGATATTCCAATTGA
Done.