Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_28871

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 687

Length: 1146
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26


Found at i:36 original size:24 final size:24

Alignment explanation


    Indices: 4--52  Score: 73
    Period size: 24  Copynumber: 2.0  Consensus size: 24

          1 ATG

                              *      
          4 GCTATGAAA-CAAGTTGCTAATTCT
          1 GCTATGAAAGCAA-TTGCCAATTCT

                                    
         28 GCTATGAAAGCAATTGCCAATTCT
          1 GCTATGAAAGCAATTGCCAATTCT

             
         52 G
          1 G

         53 GGTCATCCTC


Statistics
Matches: 23,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  24   20  0.87
  25    3  0.13

ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31


Consensus pattern (24 bp):   
GCTATGAAAGCAATTGCCAATTCT
Done.