Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_33470

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 826

Length: 1377
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.30


Found at i:722 original size:21 final size:21

Alignment explanation


    Indices: 698--739  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        688 AAATTGGTAT

                                  
        698 TTGGT-TTCTTGGGTGCTTTTG
          1 TTGGTGTT-TTGGGTGCTTTTG

                        *        
        719 TTGGTGTTTTGGTTGCTTTTG
          1 TTGGTGTTTTGGGTGCTTTTG

        740 CACTGATAAT


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  21   17  0.89
  22    2  0.11

ACGTcount: A:0.00, C:0.07, G:0.33, T:0.60


Consensus pattern (21 bp):   
TTGGTGTTTTGGGTGCTTTTG
Done.