Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_38586

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2170
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29


Found at i:113 original size:18 final size:18

Alignment explanation


    Indices: 92--128  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

         82 TCTTCCCCAC

                   *     *    
         92 CCTCTTCGCCTTCTCTCT
          1 CCTCTTCCCCTTCCCTCT

                              
        110 CCTCTTCCCCTTCCCTCT
          1 CCTCTTCCCCTTCCCTCT

             
        128 C
          1 C

        129 TTCCTCTTCT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.00, C:0.57, G:0.03, T:0.41


Consensus pattern (18 bp):   
CCTCTTCCCCTTCCCTCT
Done.