Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10701

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2418
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.26


Found at i:344 original size:24 final size:24

Alignment explanation


    Indices: 317--362  Score: 65
    Period size: 24  Copynumber: 1.9  Consensus size: 24

        307 ATTGTATCGG

                            *       
        317 ATGAAGAGGAGGAAGATGAAGATT
          1 ATGAAGAGGAGGAAGAAGAAGATT

                * *               
        341 ATGAGGTGGAGGAAGAAGAAGA
          1 ATGAAGAGGAGGAAGAAGAAGA

        363 AGATGACGAT


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  24   19  1.00

ACGTcount: A:0.46, C:0.00, G:0.41, T:0.13


Consensus pattern (24 bp):   
ATGAAGAGGAGGAAGAAGAAGATT
Done.