Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_40549

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 385

Length: 642
ACGTcount: A:0.32, C:0.19, G:0.29, T:0.20


Found at i:521 original size:21 final size:21

Alignment explanation


    Indices: 496--556  Score: 104
    Period size: 21  Copynumber: 2.9  Consensus size: 21

        486 TCTAGCCGAT

                   *             
        496 GCAGCAGAGAGGGAGGCAGCG
          1 GCAGCAGCGAGGGAGGCAGCG

                                 
        517 GCAGCAGCGAGGGAGGCAGCG
          1 GCAGCAGCGAGGGAGGCAGCG

                       *       
        538 GCAGCAGCGAGAGAGGCAG
          1 GCAGCAGCGAGGGAGGCAG

        557 AGCAGAGCAG


Statistics
Matches: 38,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   38  1.00

ACGTcount: A:0.28, C:0.21, G:0.51, T:0.00


Consensus pattern (21 bp):   
GCAGCAGCGAGGGAGGCAGCG
Done.