Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_14302

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 923

Length: 1539
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30


Found at i:1033 original size:3 final size:3

Alignment explanation


    Indices: 1027--1073  Score: 67
    Period size: 3  Copynumber: 15.7  Consensus size: 3

       1017 TCATCATCAT

                                      *               *       *           
       1027 CAC CAC CAC CAC CAC CAC CAT CAC CAC CAC CAT CAC CAT CAC CAC CA
          1 CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CA

       1074 TAGTGCTGAT


Statistics
Matches: 38,  Mismatches: 6, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
   3   38  1.00

ACGTcount: A:0.34, C:0.60, G:0.00, T:0.06


Consensus pattern (3 bp):   
CAC

Done.